:SDSPAGE.SAM
7.5% POLYACRYLAMIDE GEL
Wear gloves whenever handling polyacrylamide gels
MATERIALS:
Protogel or 30% Acrylamide
Stacking Buffer
Resolving Buffer
Glycerol
TEMED
10% Ammonium persulfate
1.5% Agarose (for large gels)
Laemmli buffer
Molecular weight standards
Alcohol and Kimwipes
Black clips (for large gels)
Glass plates, spacers, combs
Transfer pipets
PAGE running buffer
PRE-EXPT. PROCEDURE:
1. Wash 2 glass plates, 2 spacers (3, for large gel), and 1 comb with glass cleaner. Use alcohol and kimwipes to dry the plates, spacers and comb.
2. For mini-gel: assemble plates and spacers in the clamp of the apparatus
3. For large gel: use black clips to hold the 3 spacers in place around the edges of the glass plates.
4. Seal the sides with 1.5% agarose. Use a black marker and a ruler to draw a line across the glass plate to mark where stacking gel should start.
5. Prepare the two components of the 7.5 % polyacrylamide gel as follows:
Stacking Resolving
Protogel (30% acrylamide) 2 ml 7.5 ml
"Buffer" 7.5 ml 15.0 ml
Glycerol ------- 3.0 ml
Water 5.4 ml 4.2 ml
TEMED 10 ml 20 ml
When
you are ready to pour the gel add:
10%
ammonium persulfate 150 ml 300 ml
EXPT.
PROCEDURE:
1. Use
a pipet to pour the resolving gel to the black line. Use a different pipet to pour the stacking gel from the black
line to the top edge of the glass plate.
Put some stacking gel on the teeth of the comb and insert the comb. Allow gel to polymerize.
2. Once gel has hardened,
For
mini-gel: remove the comb and assemble
clamps into the electrode assembly.
For large gel: pull off the clips, the bottom spacer and the comb. Use a transfer pipet to place agarose along the top back of the glass plate without ears and insert these plates into the gel apparatus. Hold the plates in place with black clips on both sides. Use a 20 ml syringe with the curved needle to displace any air bubbles which have formed near the bottom edge of the glass plates.
3. Fill
the chambers with PAGE running buffer.
Flush out the wells using a 20 ml syringe.
4.
Prepare enough 2X Laemmli buffer
(stock is usually 5x). Put 30 mg/ml of
DTT into 2X Laemmli buffer. Add a
volume of 2X Laemmli buffer equal to sample volume to each sample.
5. Use
a needle to put a hole into the top of each sample tube and then place the
tubes in a rack over boiling water.
Allow the tubes to boil for 3 minutes.
6. Load your samples into the wells of the gel. Remember to load a molecular weight marker into at least one lane of the gel.
7. For mini-gel: Place the cover on the gel box connecting black to black and red to red. For large gel: Connect the negative (black) electrode to the upper chamber and the positive (red) electrode to the lower chamber.
Adjust the constant current to the desired setting (usually 5 miliamps for an overnight gel) and run the gel for the specified time (mini-gels can be stacked at 50 constant volts and run at 100 constant volts which will take approximately 1.5 hrs.).
BUFFER RECIPES
STACKING
GEL BUFFER (1 liter)
20 ml 0.2M EDTA
20 ml 10% SDS
12.1 g Trizma base
add to ~ 900 ml with ddH2O
adjust pH to 6.7 with H3PO4
bring volume to 1 liter
RESOLVING
GEL BUFFER (1 liter)
8 ml
0.5M EDTA
20 ml 10% SDS
90.8 g Trizma base
add to ~ 900 ml with ddH2O
adjust pH to 8.9 with HCl
bring volume to 1 liter
LAEMMLI
SAMPLE BUFFER
Prepare 10 ml 2X solution:
0.4 ml 0.1% bromophenol blue
0.2 ml 1M sodium phosphate (pH 7.0)
Prepare 10 ml of 1M NaH PO (monobasic) and 1M Na HPO (dibasic).
Prepare 5 ml of 1M sodium phosphate at pH 7.0
by combining monobasic and
dibasic phosphate solutions while monitoring
the pH
2 ml glycerin
4 ml 10% SDS
3.4 ml H2O
store at room temperature
ELECTROPHORESIS RUNNING BUFFER (16 liter)
97 g Trizma base
456 g glycine
10.7 g EDTA
16 g SDS
dissolve in 4 l of H2O in large flask, bring up to 16 l in carboy with deionized water.